Clocks and Oscillators
On a desktop machine the clock is somebody else's problem — it was configured by firmware you never see, and by the time your program runs it is a constant. On a microcontroller you are that firmware. The chip comes out of reset running on a cheap internal RC oscillator at a fraction of its rated speed, with almost every peripheral's clock switched off, and the first job your code has is to build the clock tree the rest of the system will run on. Nothing you write behaves as intended until that is done.